Networks

Each entry below contains a link to zipped archives each containing three files. The first file in each archive lists the nodes of each network, and the other two files list the edges of each network.

Gene Set Files

This file contains a list of control vs. perturbation gene sets from RummaGEO

Atlas GMTs

This file contains the cell- and cancer-type gene sets used in the cell and cancer atlas pages, respectively.

Network-Building Notebooks

Links to notebooks used to construct, filter, benchmark, and format the GRNs. The GitHub link will redirect you to the most recent version of that file in GitHub.