Transcription Factor Enrichment Analysis with ChEA3

Enter a set of Entrez gene symbols below to perform transcription factor enrichment analysis using ChEA3. The result is a subnetwork of connected transcription factors enriched for the query set.
Learn how to prepare differentially expressed gene sets from an RNA-seq gene expression count matrix:  Gene count matrix demo notebook in Google Colab  
Learn how to prepare gene sets from a BED file: BED file demo notebook in Google Colab  

Please acknowledge ChEA3 in your publications using the following reference:

Keenan AB, Torre D, Lachmann A, Leong AK, Wojciechowicz M, Utti V, Jagodnik K, Kropiwnicki E, Wang Z, Ma'ayan A (2019) ChEA3: transcription factor enrichment analysis by orthogonal omics integration. Nucleic Acids Research. doi: 10.1093/nar/gkz446